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Table 2 Numbers of contigs identified in de novo transcriptome assembly of susceptible and resistantS. phurejagenotypes at various TPM threshold values

From:The mechanism of potato resistance toGlobodera rostochiensis: comparison of root transcriptomes of resistant and susceptibleSolanum phurejagenotypes

TPM threshold Susceptible genotype Resistant genotype
Total contigs Novel contigs novel contigs with predicted Pfam domains Total contigs Novel contigs novel contigs with predicted Pfam domains
1 66,664 7915 4817 54,866 11,269 6017
2 53,094 4233 2520 41,481 6139 3249
3 46,289 3038 1757 35,620 4571 2338
4 41,682 2424 1370 31,810 3795 1889
5 38,152 2025 1131 28,950 3301 1593
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BMC Plant Biology

ISSN: 1471 - 2229

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