From:Identification of 50 K Illumina-chip SNPs associated with resistance to spot blotch in barley
| # | Marker | Chr | Physical map position (bp) | Genetic map position (cM) | p-value | Alleles | MAF |
|---|---|---|---|---|---|---|---|
| 1 | JHI-Hv50k-2016-157070 | 3H | 17,888,495 | na | 6.04E-08* | C/G | С(0.19) |
| 2 | JHI-Hv50k-2016-156842 | 3H | 17,559,189 | na | 1.20E-06* | A/G | A(0.18) |
| 3 | JHI-Hv50k-2016-33568 | 1H | 446,893,297 | na | 1.29E-06* | G/T | G(0.15) |
| 4 | JHI-Hv50k-2016-19966 | 1H | 74,337,494 | na | 2.21E-06 | G/T | G(0.27) |
| 5 | JHI-Hv50k-2016-407341 | 6H | 462,119,913 | na | 6.35E-06 | T/C | T(0.17) |
| 6 | SCRI_RS_83731 | 2H | na | 57.0 | 9.86E-06 | T/G | T(0.21) |
| 7 | SCRI_RS_162917 | 2H | 517,229,083 | 57.2 | 9.86E-06 | A/G | A(0.21) |
| 8 | SCRI_RS_233449 | 2H | 520,779,376 | 57.0 | 9.86E-06 | G/A | G(0.21) |
| 9 | SCRI_RS_186769 | 2H | na | 57.4 | 1.16E-05 | G/C | G(0.22) |
| 10 | SCRI_RS_132839 | 2H | 524,447,113 | 57.0 | 1.16E-05 | A/G | A(0.22) |
| 11 | SCRI_RS_136740 | 2H | 524,817,496 | 57.2 | 1.16E-05 | A/C | A(0.22) |
| 12 | BOPA1_3355–605 | 2H | na | na | 1.33E-05 | C/A | C(0.19) |
| 13 | SCRI_RS_153880 | 2H | na | 59.3 | 1.33E-05 | T/C | T(0.19) |
| 14 | SCRI_RS_206529 | 2H | na | 60.5 | 1.33E-05 | A/G | A(0.19) |
| 15 | BOPA2_12_11504 | 2H | 520,773,185 | 57.0 | 1.33E-05 | A/G | A(0.19) |
| 16 | BOPA2_12_30108 | 2H | 556,024,085 | 59.3 | 1.33E-05 | A/C | A(0.19) |
| 17 | JHI-Hv50k-2016–98667 | 2H | 559,662,446 | na | 1.33E-05 | A/G | A(0.19) |
| 18 | SCRI_RS_141789 | 2H | 551,217,066 | 59.3 | 1.33E-05 | A/C | A(0.19) |
| 19 | SCRI_RS_182631 | 1H | 74,327,682 | 46.8 | 1.44E-05 | G/A | G(0.24) |
| 20 | SCRI_RS_188937 | 1H | 74,325,931 | 46.8 | 1.44E-05 | T/C | T(0.24) |
| 21 | JHI-Hv50k-2016-19943 | 1H | 74,327,370 | na | 1.57E-05 | C/T | C(0.26) |
| 22 | BOPA2_12_10159 | 1H | 98,741,757 | 47.7 | 2.19E-05 | C/A | C(0.33) |
| 23 | BOPA2_12_30438 | 1H | 98,026,175 | 47.7 | 2.19E-05 | A/G | A(0.33) |
| 24 | JHI-Hv50k-2016-20725 | 1H | 96,478,890 | na | 2.19E-05 | C/G | C(0.33) |
| 25 | BOPA2_12_10235 | 1H | 80,265,474 | 47.7 | 2.42E-05 | A/C | A(0.29) |
| 26 | JHI-Hv50k-2016-159556 | 3H | 24,223,023 | na | 2.64E-05 | G/A | G(0.41) |
| 27 | JHI-Hv50k-2016–99999 | 2H | 589,523,785 | na | 3.04E-05 | T/C | T(0.48) |
| 28 | JHI-Hv50k-2016-226122 | 4H | 645,489 | na | 3.04E-05 | A/G | A(0.37) |
| 29 | BOPA2_12_31179 | 1H | 449,874,128 | 58.4 | 3.06E-05 | C/G | C(0.13) |
| 30 | JHI-Hv50k-2016-20076 | 1H | 80,292,944 | na | 3.41E-05 | C/T | C(0.32) |
| 31 | SCRI_RS_85918 | 1H | 80,292,373 | 47.7 | 3.41E-05 | G/A | G(0.32) |
| 32 | JHI-Hv50k-2016–99440 | 2H | 582,800,216 | na | 4.11E-05 | A/G | A(0.36) |
| 33 | BOPA1_2634–2228 | 2H | 520,264,176 | na | 4.53E-05 | C/A | C(0.22) |
| 34 | BOPA1_5160–268 | 2H | 520,778,105 | na | 4.53E-05 | G/A | G(0.22) |
| 35 | SCRI_RS_191136 | 2H | 520,437,064 | 57.0 | 4.53E-05 | T/C | T(0.22) |
| 36 | JHI-Hv50k-2016-156387 | 3H | 16,420,851 | na | 5.56 e-05 | C/A | C(0.10) |
| 37 | JHI-Hv50k-2016-156999 | 3H | 17,817,242 | na | 5.80E-05 | A/C | A(0.25) |
| 38 | JHI-Hv50k-2016-157182 | 3H | 17,954,351 | na | 5.80E-05 | T/A | T(0.25) |
| 39 | JHI-Hv50k-2016-155569 | 3H | 15,256,329 | na | 5.85E-05 | A/G | A(0.14) |
| 40 | BOPA2_12_10035 | 2H | 463,231,068 | 56.7 | 6.51E-05 | G/A | G(0.19) |
| 41 | SCRI_RS_161169 | 2H | 483,288,774 | 56.7 | 6.51E-05 | G/A | G(0.19) |
| 42 | JHI-Hv50k-2016–92202 | 2H | 309,655,073 | na | 2.17E-04 | T/C | T(0.21) |
| 43 | BOPA2_12_30179 | 2H | na | 56.4 | 2.94E-04 | A/G | A(0.19) |
| 44 | SCRI_RS_97417 | 3H | 15,255,540 | 12.1 | 3.91E-04 | C/T | C(0.34) |
| 45 | JHI-Hv50k-2016-156336 | 3H | 16,375,848 | na | 4.23E-04 | A/T | A(0.11) |
| 46 | BOPA1_5254–1845 | 2H | 175,163,708 | na | 4.59E-04 | G/A | G(0.18) |
| 47 | SCRI_RS_109192 | 2H | 175,053,470 | na | 4.59E-04 | G/T | G(0.18) |
| 48 | JHI-Hv50k-2016-155951 | 3H | 15,469,647 | na | 7.68E-04 | T/A | T(0.30) |