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Table 1 Maximum likelihood tests of selection onChs,Chi,F3h,F3’h,Dfr, andAnsusing HyPhy

From:The factors affecting the evolution of the anthocyanin biosynthesis pathway genes in monocot and dicot plant species

Gene Model № of parameters LnL ω
Chs Global 33 −7585.83 ω = 0.036
Local 59 −7532.90**
Class (monocotsvsdicots) 35 −7583.59 ωm = 0.035, ωd = 0.039
Pollination (pollinatorsvsno-pollinators) 36 −7577.00** ωp = 0.099, ωnp = 0.042
Regulation (color-depvscolor-indep) 35 −7582.90 ωcd = 0.051, ωcid = 0.035
Chi Global 33 −4367.90 ω = 0.121
Local 59 −4349.01 * *
Class (monocotsvsdicots) 35 −4366.33 ωm = 0.163, ωd = 0.104
Pollination (pollinatorsvsno-pollinators) 36 −4362.81* ωp = 0.102, ωnp = 0.173
Regulation (color-depvscolor-indep) 35 −4367.80 ωcd = 0.136, ωcid = 0.119
F3h Global 33 −5750.13 ω = 0.061
Local 59 −5685.06**
Class (monocotsvsdicots) 35 −5731.97** ωm = 0.125, ωd = 0.034
Pollination (pollinatorsvsno-pollinators) 36 −5717.46** ωp = 0.058, ωnp = 0.117
Regulation (color-depvscolor-indep) 35 −5723.24** ωcd = 0.127, ωcid = 0.032
F3’h Global 33 −10,269.21 ω = 0.085
Local 59 −10,230.12**
Class (monocotsvsdicots) 35 −10,257.69** ωm = 0.120, ωd = 0.065
Pollination (pollinatorsvsno-pollinators) 36 −10,259.64** ωp = 0.068, ωnp = 0.112
Regulation (color-depvscolor-indep) No data
Dfr Global 33 −6728.67 ω = 0.095
Local 59 −6661.18**
Class (monocotsvsdicots) 35 −6701.70** ωm = 0.201, ωd = 0.061
Pollination (pollinatorsvsno-pollinators) 36 −6703.59** ωp = 0.114, ωnp = 0.161
Regulation (color-depvscolor-indep) 35 −6722.73* ωcd = 0.098, ωcid = 0.107
Ans Global 33 −7629.37 ω = 0.094
Local 59 −7547.03**
Class (monocotsvsdicots) 35 −7588.21** ωm = 0.219, ωd = 0.049
Pollination (pollinatorsvsno-pollinators) 36 −7585.99** ωp = 0.067, ωnp = 0.196
Regulation (color-depvscolor-indep) 35 −7626.46 ωcd = 0.087, ωcid = 0.106
  1. Three factors were tested: plant classes (two separate ω were calculated for monocotyledonous and dicotyledonous plant species, ωm/ωd); pollination type (the ω for the plant species pollinated by pollinators was calculated separately from the plant species pollinated without attracting pollinators, ωp/ωnp); regulation pattern (the plant species were combined based on color-dependent and color-independent ABP gene regulation, ωcd/ωind). Significant improvement in the likelihood in comparison with the one-ratio model (Global) is indicated with asterisks: **p < 0.001, *p < 0.05
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BMC Plant Biology

ISSN: 1471-2229

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