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Table 6 Barley metabolic pathways that involve genes with differential expression between Bowman and i:BwAlmlines

From:Identification of nuclear genes controlling chlorophyll synthesis in barley by RNA-seq

Pathway Gene IDs Protein product names Log2(FC) p-value
Calvin-Benson-Bassham cycle MLOC_58999 Phosphoribulokinase −3,89 0.0001
MLOC_44795 Ribulose bisphosphate carboxylase small chain −4,67 0.002
MLOC_34272 Uncharacterized protein −2,50 5e-05
MLOC_61558 Ribulose bisphosphate carboxylase large chain −3,35 0.014
MLOC_64679 Ribulose bisphosphate carboxylase small chain −3,86 0.007
MLOC_76055 Phosphoglycerate kinase −2,08 0.002
MLOC_44511 Predicted protein −4,35 0.002
MLOC_62317 high cyclic electron flow 1 −3,31 0.002
MLOC_19670 Uncharacterized protein −2,17 0.002
MLOC_21811 Ribulose bisphosphate carboxylase small chain −3,72 0.0005
Photosynthesis light reactions MLOC_77860 Predicted protein −1,87 0.02
MLOC_24730 Uncharacterized protein −4,95 0.002
MLOC_64318 Predicted protein −2,42 0.006
MLOC_69460 photosystem I subunit O −5,97 0.002
MLOC_70480 Uncharacterized protein −4,29 0.01
MLOC_70835 Cytochrome b6-f complex iron-sulfur subunit −2,64 0.002
MLOC_71570 Uncharacterized protein −4,74 0.002
二磷酸核酮糖羧化酶分流 MLOC_34272 Uncharacterized protein −3.51 0.002
MLOC_44795 Ribulose bisphosphate carboxylase small chain −5.04 0.002
MLOC_58999 Phosphoribulokinase −4.02 0.0001
MLOC_61558 Ribulose bisphosphate carboxylase large chain −4.47 0.014
MLOC_64679 Ribulose bisphosphate carboxylase small chain −4.27 0.007
MLOC_21811 Ribulose bisphosphate carboxylase small chain −3,72 0.0005
Adenosine ribonucleotidesde novobiosynthesis MLOC_15467 Adenylosuccinate synthetase −2,82 0.002
MLOC_24862 Uncharacterized protein −2,39
MLOC_40997 Uncharacterized protein −2,53 0.02
MLOC_58581 ATPase F1 complex gamma subunit protein −2,29 0.002
MLOC_74679 ATP synthase delta-subunit gene −3,14 0.002
MLOC_75851 Uncharacterized protein −1.57 0.007
Chlorophyllide a biosynthesis I (aerobic, light-dependent) MLOC_44116 Predicted protein −2.94 0.02
MLOC_81101 Predicted protein −2.17 0.002
MLOC_11877 Uncharacterized −2.55 0.002
MLOC_80913 Uncharacterized −3.41 0.002
MLOC_5142 Predicted protein −1.57 0.002
MLOC_49468 Magnesium-protoporphyrin IX monomethyl ester −4.14 0.002
  1. Values of logarithm of fold change andp-values (corrected with Benjamini-Hochberg procedure) are provided for each gene