| Genotype | Total SNPs | Line specific SNPs | Total deletions | Line specific deletions | Total insertions | Line specific insertions | Genes deleted | Genes duplicated |
|---|---|---|---|---|---|---|---|---|
| ICC 4958 | 340,803 | 3 | 29,976 | 1 | 28,429 | 0 | 23 | 47 |
| ICCV 00108 | 125,680 | 49 | 9,217 | 6 | 8,907 | 2 | 30 | 323 |
| ICCV 10 | 174,644 | 219 | 14,137 | 20 | 13,534 | 22 | 14 | 21 |
| ICCV 97105 | 261,406 | 120 | 24,016 | 6 | 24,274 | 13 | 18 | 42 |
| JAKI 9218 | 315,032 | 1 | 30,320 | 0 | 31,339 | 0 | 8 | 1,120 |
| JG 11 | 207,785 | 496 | 17,690 | 36 | 17,640 | 31 | 21 | 25 |
| JG 130 | 166,662 | 13 | 12,936 | 2 | 12,342 | 3 | 25 | 17 |
| JG 16 | 147,615 | 95 | 10,579 | 10 | 10,094 | 6 | 27 | 73 |